MCPep server - a server for MC simulations of peptides within membrane

Please upload the peptide structure file

PDB File
(no more than 50 amino acids; please open your pdb file in a text editor and make sure that all atoms are marked as ATOMS, rather than HETATMs, and only standard amino acids' names are used.)

Or enter the peptide sequence (in one-letter code)

(e.g., GIGAVLKVLTTGLPALISWIKRKRQQ; no more than 50 amino acids)

The environment:

Membrane hydrophobic thickness (Å)

Fraction of charged lipids (%)

Concentration of monovalent salts (M)

Please enter your job name (Optional)

Please enter your email address (Optional)

Your email address will be only used to update you the moment the results are ready.

The submission may take a few minutes. Please be patient.

Advanced options

Number of independent MC runs

Number of MC cycles in each independent run

Root mean square deviation cutoff for clustering of resultant conformations (Å)

Please upload the peptide structure file

Or enter the peptide sequence (in one-letter code)

The environment:

Advanced options

Questions and comments are welcome! Please contact us