Citing the MCPep server please refer to:
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Yana Gofman, Turkan Haliloglu, and Nir Ben-Tal. 2012.
Monte Carlo simulations of peptide-membrane interactions with the MCPep web-server.
Nucleic Acids Res 40(W1):W358-W363. PubMed
Description of the Monte Carlo simulation model:
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Amit Kessel, Dalit Shental-Bechor, Turkan Haliloglu, and Nir Ben-Tal. 2003.
Interactions of hydrophobic peptides with lipid bilayers: Monte Carlo simulations with M2δ.
Biophys J 85:3431-3444.
PubMed
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Dalit Shental-Bechor, Turkan Haliloglu, and Nir Ben-Tal. 2007.
Interactions of cationic-hydrophobic peptides with lipid bilayers: a Monte Carlo simulation method.
Biophys J 93:1858-1871.
PubMed
Studies that used the same Monte Carlo model:
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Dalit Shental-Bechor, Safak Kirca, Nir Ben-Tal and Turkan Haliloglu. 2005.
Monte Carlo studies of folding, dynamics, and stability in alpha-helices.
Biophys J 88:32391-2402.
PubMed
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Michal Gordon-Grossman, Yana Gofman, Herbert Zimmermann, Veronica Frydman, Yechiel Shai, Nir Ben-Tal and Daniella Goldfarb. 2009.
A combined pulse EPR and Monte Carlo simulation study provides molecular insight on peptide-membrane interactions.
J Phys Chem 113:12687-12695.
PubMed
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Yana Gofman, Sebastian Linser, Agnieszka Rzeszutek, Dalit Shental-Bechor, Sergio S.Funari, Nir Ben-Tal and Regine Willumeit. 2010.
Interaction of an Antimicrobial Peptide with Membranes: Experiments and Simulations with NKCS.
J Phys Chem 114:4230-4237.
PubMed
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Jerzy Dorosz, Yana Gofman, Sofiya Kolusheva, Daniel Otzen, Nir Ben-Tal, Niels Chr. Nielsen, Raz Jelinek. 2010.
Membrane interactions of novicidin, a novel antimicrobial peptide: phosphatidylglycerol promotes bilayer insertion.
Interaction of an Antimicrobial Peptide with Membranes: Experiments and Simulations with NKCS.
J Phys Chem 114:11053-11060.
PubMed
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Michal Gordon-Grossman, Ilya Kaminker, Yana Gofman, Yechiel Shai, and Daniella Goldfarb. 2011.
W-band pulse EPR distance measurements in peptides using Gd3+- dipicolinic acid derivatives as spin labels.
Chem Chem Phys 13:10771-10780.
PubMed
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Elisa Merklinger, Yana Gofman, Alexej Kedrov, A. J.M. Driessen, Nir Ben-Tal, Yechiel Shai and Doron Rapaport. 2011.
Membrane-integration of a mitochondrial signal-anchored protein does not require additional proteinaceous factors.
Biochem J 442:381-389.
PubMed
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